PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00450g00124.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 362aa    MW: 39844.4 Da    PI: 5.7845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00450g00124.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-121521911155
                               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Peaxi162Scf00450g00124.1 152 RRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 191
                               89*****************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.031141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16143203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-15148196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-16149201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9152191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-10157195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MANNNMYHHN ASSSFSWTEP DHEPDDISVF VRQILRPSSS SSSNFMNMKG SEMQYSSSLP  60
NLLSKNQHGL ESCSMLNTSS GNILSSFSGA YNIPTGVVNV CSSSVGTMDN DLDEYECESE  120
GGTEDFVVEA SGQQPSSSSS RNSSKRSRAA ERRRSRINEK MKALQNLIPN SNKTDKASML  180
DEAIEYLKQL QLQVQMLTMK NGLFPLGLPR VLQQNQLSQQ RMGLCEGDGF MKDNVASALH  240
VNQDTSLKAI FSPSNNCTET KLTPVATMAN VNLHNAFESE SSINTHLDPF QLSRNSKIKI  300
LAYILTSFAF DPGAHVASLA PFDTNASNLK SNTLEACLHR YQLGALNETN MDCDQLLAPH  360
LY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0042354e-55FJ004235.1 Catharanthus roseus bHLH transcription factor MYC5 (MYC5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607890.11e-163PREDICTED: transcription factor SPATULA isoform X1
RefseqXP_009607891.11e-163PREDICTED: transcription factor SPATULA isoform X2
RefseqXP_016487135.11e-163PREDICTED: transcription factor SPATULA-like
SwissprotQ9FUA44e-35SPT_ARATH; Transcription factor SPATULA
TrEMBLK4BDC41e-147K4BDC4_SOLLC; Uncharacterized protein
STRINGSolyc02g093280.2.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-29bHLH family protein